2024
High-content high-resolution microscopy and deep learning assisted analysis reveals host and bacterial heterogeneity during Shigella infection. López-Jiménez AT, Brokatzky D, Pillay K, Williams T, Özbaykal Güler G, Mostowy S. bioRxiv 583762 DOI: 10.1101/2024.03.06.583762
2023
2021
Interplay between septins and ubiquitin-mediated xenophagy during Shigella entrapment. Lobato-Márquez D, Conesa JJ, López-Jiménez AT, Divine ME, Pruneda JN, Mostowy S. Autophagy Rep. 2(1):2213541. (2023) DOI: 10.1080/27694127.2023.2213541
Septins and K63 ubiquitin chains are present in separate bacterial microdomains during autophagy of entrapped Shigella. Lobato-Márquez D, Conesa JJ, López-Jiménez AT, Divine ME, Pruneda JN, Mostowy S. J Cell Sci. Apr 1;136(7):jcs261139 (2023) DOI: 10.1242/jcs.261139
Acquisition of a large virulence plasmid (pINV) promoted temperature-dependent virulence and global dispersal of O96:H19 enteroinvasive Escherichia coli. Miles SL, Torraca V, Dyson ZA, López-Jiménez AT, Foster-Nyarko E, Lobato-Márquez D, Jenkins C, Holt KE, Mostowy S. mBio 14(4):e0088223 (2023) DOI: 10.1128/mbio.00882-23
An automated microscopy workflow to study Shigella-neutrophil interactions and antibiotic efficacy in vivo. Lensen A, Gomes MC, López-Jiménez AT, Mostowy S. Dis Model Mech 16(6):dmm049908 (2023) DOI: 10.1242/dmm.049908
Emerging technologies and infection models in cellular microbiology. López-Jiménez AT, Mostowy S. Nat Commun (2021). DOI: 10.1038/s41467-021-26641-w
Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition). Klionsky DJ, et al. [including López-Jiménez - AT]. Autophagy (2021). DOI: 10.1080/15548627.2020.1797280
2019
The developmental cycle of Dictyostelium discoideum ensures curing of a mycobacterial infection at both cell-autonomous level and by collaborative exclusion. López-Jiménez AT, Hagedorn M, Delincé MJ, McKinney JD, Soldati T. bioRxiv 586263. DOI: 10.1101/586263
2018
The ESCRT and autophagy machineries cooperate to repair ESX-1-dependent damage at the Mycobacterium-containing vacuole but have opposite impact on containing the infection. López-Jiménez AT, Cardenal-Muñoz E, Leuba F, Gerstenmaier L, Barisch C, Hagedorn M, King JS, Soldati T. PLoS Pathog. 13(14) (2018). DOI: 10.1371/journal.ppat.1007501
Localization of all four ZnT zinc transporters in Dictyostelium and impact of ZntA and B knockout on bacteria killing. Barisch C, Kalinina V, Lefrançois LH, Appiah J, López-Jiménez AT, Soldati T. Journal of Cell Science 131(23), (2018) DOI: 10.1242/jcs.222000
When Dicty met Myco, a (not so) romantic history about one amoeba and its intracellular pathogen. Cardenal-Munoz E, Barisch C, Lefrançois LH, López-Jiménez AT and Soldati T. Frontiers in Cellular and Infection Microbiology 7:529 (2018).
Eat prey, live: Dictyostelium discoideum as a model for cell-autonomous defenses. Dunn JD, Bosmani C, Barisch C, Raykov L, Lefrançois LH, Cardenal-Muñoz E, López-Jiménez AT and Soldati T. Frontiers in Immunology 8:1906 (2018). DOI: 10.3389/fimmu.2017.01906
2017
Mycobacterium marinum antagonistically induces an autophagic response while repressing autophagic flux in a TORC-1 and ESX-1 dependent manner. Cardenal-Muñoz E, Arafah S, López-Jiménez AT, Kicka S, Falaise A, Bach F, Schaad O, King JS, Hagedorn M, Soldati T. PLoS Pathog 13(4) (2017). DOI: 10.1371/journal.ppat.1006344
2016
A microfuidic cell-trapping device for single-cell tracking of host-microbe interactions. Delincé A, Bureau JB, López-Jiménez AT, Cosson P, Soldati T, McKinney JD. Lab Chip 16(17):3276-85 (2016). DOI: 10.1039/c6lc00649c
2015
Living imaging of Mycobacterium marinum infection in Dictyostelium discoideum. Barisch C*, López-Jiménez AT*, Soldati T. Methods Mol Biol. 1285:369-85 (2015). DOI: 10.1007/978-1-4939-2450-9 23